| ORIGINAL ARTICLE |
|
| Year : 2015 | Volume
: 4
| Issue : 1 | Page : 160 |
|
|
Distribution of cytokine gene single nucleotide polymorphisms among a multi-ethnic Iranian population
Zana Karimi Kurdistani1, Samaneh Saberi2, Yeganeh Talebkhan2, Akbar Oghalaie2, Maryam Esmaeili2, Nazanin Mohajerani2, Maryam Bababeik2, Parisa Hassanpour2, Shaghik Barani2, Ameneh Farjaddoost2, Fatemeh Ebrahimzadeh2, Jean Trejaut3, Marjan Mohammadi2
1 HPGC Group, Department of Medical Biotechnology, Biotechnology Research Center, Pasteur Institute of Iran, Tehran; Department of Molecular Genetics, Fars Science and Research Branch, Islamic Azad University, Shiraz, Iran
2 HPGC Group, Department of Medical Biotechnology, Biotechnology Research Center, Pasteur Institute of Iran, Tehran, Iran
3 Mackay Memorial Hospital, Taipei, Iran
Correspondence Address:
Dr. Marjan Mohammadi
HPGC Group, Medical Biotechnology Department, Biotechnology Research Center, Pasteur Institute of Iran, No. 69, Pasteur Blvd., Tehran 13164
Iran
 Source of Support: None, Conflict of Interest: None  | Check |
DOI: 10.4103/2277-9175.161809
|
|
|
Background: Cytokine gene single nucleotide polymorphisms (SNPs) are widely used to study susceptibility to complex diseases and as a tool for anthropological studies.
Materials and Methods: To investigate cytokine SNPs in an Iranian multi-ethnic population, we have investigated 10 interleukin (IL) SNPs (IL-1β (C-511T, T-31C), IL-2 (G-384T), IL-4 (C-590T), IL-6 (G-174C), IL-8 (T-251A), IL-10 (G-1082A, C-819T, C-592A) and tumor necrosis factor-alpha (TNF-α) (G-308A) in 415 Iranian subjects comprising of 6 different ethnicities. Allelic and genotypic frequencies as well as Hardy-Weinberg equilibrium (HWE) were calculated by PyPop software. Population genetic indices including observed heterozygosity (H o ), expected heterozygosity (H e ), fixation index (F IS ), the effective number of alleles (Ne ) and polymorphism information content (PIC) were derived using Popgene 32 software. Multidimensional scaling (MDS) was constructed using Reynold's genetic distance obtained from the frequencies of cytokine gene polymorphism.
Results: Genotypic distributions were consistent with the HWE assumptions, except for 3 loci (IL-4-590, IL-8-251 and IL-10-819) in Fars and 4 loci (IL-4-590, IL-6-174, IL-10-1082 and TNF-α-308) in Turks. Pairwise assessment of allelic frequencies, detected differences at the IL-4-590 locus in Gilakis versus Kurds (P = 0.028) and Lurs (P = 0.022). Mazanis and Gilakis displayed the highest (H o = 0.50 ± 0.24) and lowest (H o = 0.34 ± 0.16) mean observed heterozygosity, respectively.
Conclusions: MDS analysis of our study population, in comparison with others, revealed that Iranian ethnicities except Kurds and Mazanis were tightly located within a single cluster with closest genetic affinity to Europeans. |
|
|
|
| [FULL TEXT] [PDF]* |
|
 |
|
